Manuscriptly

Frequently Asked Questions

Everything you need to know about getting your manuscript submission-ready.

What is Manuscriptly and how does it work?

Manuscriptly checks your manuscript against a specific journal's submission guidelines before you submit it. You upload your paper, choose your target journal, and an AI agent reads that journal's author instructions and your manuscript together. It flags every place they do not line up, from formatting and structure to citations, figures, tables, statistical reporting, and writing quality. Each issue appears as a tracked change you accept or dismiss one at a time, and you download a corrected file when you are done.

What can this do that regular AI tools can't?

AI assistants like Claude, Gemini, or ChatGPT struggle to hold the whole context of a manuscript that runs to thousands of words and cross-reference it against detailed, lengthy journal guidelines at the same time. They can still be useful, but they often miss the small, specific errors that are the actual reason a paper gets returned to you. Don't believe us? Try it yourself.

How is this different from a grammar checker or a general AI writing tool?

A grammar checker reviews your writing in the abstract. Manuscriptly reviews it against the rules of the journal you are actually submitting to. It will not just say a sentence is wordy. It will tell you your abstract runs over your target journal's word limit, your references use the wrong style for that journal, or your figure callouts do not match its format. We read the guidelines for your specific journal and check your manuscript against them, so the things you fix are the things that journal will actually look for.

What does Manuscriptly check?

Four areas. Journal compliance covers the formatting, structure, and submission rules specific to your target journal. We also check citations and references, figures, tables and statistical reporting, and writing quality and tone. Every finding is tied to the journal's own guideline or to a clear academic writing standard, not to a vague preference.

Will it help me avoid desk rejection?

That is what it is built for. Many manuscripts are returned before review because they do not follow the journal's formatting, reference, or submission requirements, not because of the science. Manuscriptly catches those problems while you can still fix them, so an editor sees a clean, compliant manuscript.

Will your suggestions change the meaning of my work?

No. Manuscriptly does not rewrite your paper or generate text for you. It points out specific issues and proposes targeted fixes that you accept or reject one by one, the way a careful copy editor would. Your words and your argument stay yours, and nothing changes unless you approve it.

Will I keep copyright over my manuscript?

Yes. You keep ownership of your manuscript and of every edit you accept. We only use your work to provide the service to you, as set out in our terms, and we never claim rights over your research.

Do you replace peer review?

No. Manuscriptly gets your manuscript clean, compliant, and ready to submit. It does not judge your science, and it does not replace the journal's editors or reviewers. It is editorial assistance, within ICMJE author policies.

Is my manuscript kept confidential, and do you train AI on it?

Your manuscript is encrypted in transit (TLS 1.3) and at rest (AES-256). We never sell it, and we never use it to train AI models. It is processed only by the subprocessors needed to run the audit, which are listed in our privacy policy.

How long do you keep my files, and can I delete them?

Your files stay yours, and deletion is permanent: the document, every revision, and the analysis go for good, and we keep no copies. Self-serve deletion isn't available yet, so to delete a paper or your entire account, email info@manuscriptly.net and we will take care of it promptly.

What AI does Manuscriptly use?

Manuscriptly runs on large language models from established providers, used under commercial terms that prohibit training on your content. The current subprocessors are listed in our privacy policy, so you always know who processes your work.

What journals do you support?

Our goal is to cover every English-language journal. If you do not see yours, request it and we will add it promptly.

What file formats do you accept?

DOCX (.docx) for anything written: your manuscript, cover letter, response to reviewers, and text supplements. Figures upload as image files (PNG, JPG or TIFF) and tables as Excel files (XLSX). PDFs aren't supported at launch, so if your paper lives in a PDF, export it as a .docx and upload that. You get back a corrected, submission-ready DOCX you can open and review in Word.

Can I try it for free, and what does it cost?

You can run a free analysis to see a sample of the issues in your manuscript. To unlock the full report, apply fixes, and download the corrected file, you can buy a single paper or subscribe to a monthly plan. Current prices are on our pricing page.

Can I change or cancel my plan?

Yes. You can upgrade, change, or cancel your plan at any time from your account settings. One-off per-paper purchases never expire, and subscriptions are prorated.